Accurate estimation of choriocapillaris flow deficits beyond normal intercapillary spacing with swept source OCT angiography
Original Article

Accurate estimation of choriocapillaris flow deficits beyond normal intercapillary spacing with swept source OCT angiography

Qinqin Zhang1, Yingying Shi2, Hao Zhou1, Giovanni Gregori2, Zhongdi Chu1, Fang Zheng2, Elie H. Motulsky2, Luis de Sisternes3, Mary Durbin3, Philip J. Rosenfeld2, Ruikang K. Wang1,4

1Department of Bioengineering, University of Washington, Seattle, WA, USA;2Department of Ophthalmology, Bascom Palmer Eye Institute, University of Miami Miller School of Medicine, Miami, FL, USA;3Advanced Development, Carl Zeiss Meditec, Inc., Dublin, CA, USA;4Department of Ophthalmology, University of Washington Eye Institute, Seattle, WA, USA

Correspondence to: Ruikang K. Wang, PhD. Department of Bioengineering, University of Washington, Seattle, WA, USA. Email:

Background: To estimate choriocapillaris flow deficits beyond normal intercapillary distance with swept source optical coherence tomography angiography (SS-OCTA).

Methods: Subjects were enrolled and repeated SS-OCTA scans were performed using the 3 mm × 3 mm scan pattern. Blood flow was identified using the complex optical microangiography (OMAGc) algorithm. The choriocapillaris (CC) was defined as a 20 µm slab of the flow volume beneath the outer boundary of Bruch’s membrane (BM) and was compensated with the corresponding structural image for flow deficits measurement. Flow deficits were segmented based on one mean standard deviation from a normal database. A histogram based thresholding method was developed to remove small flow deficits that were determined by examining intercapillary spacing within normal CC networks. A registration method based on affine and B-spline transformation was utilized for the CC angiogram averaging. Four repeated scans were averaged, and results were compared with and without removal of small flow deficits after averaging a different number of scans (N=1, group 1; N=2, group 2; N=3, group 3 and N=4, group 4).

Results: Seven normal subjects were enrolled. Intercapillary distance was found to be 24 µm for the CC networks under OCTA, which was used as the threshold to exclude small flow deficits for CC quantification. After averaging, significant reduction in background noise and improvement in continuity of blood vessel networks were observed both on retinal and choriocapillaris angiograms. Flow deficit percentages of the choriocapillaris were significantly reduced with averaging (group 1 vs. group 2: P<0.0001; group 2 vs. group 3: P<0.001; group 3 vs. group 4: P<0.001). The flow deficit percentages were also significantly reduced after removing the small flow deficits (≤24 µm in diameter) in all groups (P<0.01). A statistically significant difference was found after removing small flow deficits (≤24 µm in diameter) between group 1 and group 2 (P<0.001), between group 2 and group 3 (P<0.05), and between group 3 and group 4 (P<0.05). However, the significance was decreased compared to that without small flow deficits removal.

Conclusions: A method was developed to improve the robust estimation of choriocapillaris flow deficits by removing the small flow deficits corresponding to normal intercapillary spacing. After the removal of small flow deficits, fewer repeats were required for image averaging to achieve comparable accuracy of flow deficit measurements with SS-OCTA.

Keywords: Intercapillary spacing; oxygen diffusion distance; optical coherence tomography angiography (OCTA); swept source OCTA; choriocapillaris, flow deficits

Submitted Aug 14, 2018. Accepted for publication Aug 21, 2018.

doi: 10.21037/qims.2018.08.10


As a non-invasive, high resolution and rapid imaging modality, optical coherence tomography angiography (OCTA) has become important for the diagnosis and management of retinal diseases (1-14). However, due to the strong scattering property of the retinal pigment epithelium (RPE) at the wavelength of 840 nm, spectral domain OCTA (SD-OCTA) has difficulty in imaging the choroidal vasculature through an intact RPE (15,16). In comparison, swept source OCTA (SS-OCTA) operating at a longer wavelength of 1,060 nm provides better imaging of the choroidal vasculature, including the choriocapillaris, due to less scattering by the RPE (15,16). In addition, with a deeper penetration into the choroid and greater laser power due to the safer wavelength, SS-OCTA has a better signal to noise ratio when imaging the choriocapillaris.

SS-OCTA has been used to visualize the choriocapillaris (11,14,17). The dense lobular pattern of the choriocapillaris in the central macula and the radially elongated lobules in the periphery were observed and the morphologies were compared with histopathologic specimens (11,17). Quantitative assessments have focused on measurements of flow or signal deficits due to the difficulty of imaging directly the complex network of capillaries in the central macula. Spaide et al. calculated the distribution of choriocapillaris flow voids with SD-OCTA via a thresholding method in normal and diseased eyes and observed a power law distribution with parameters depending on age and disease (18). Using the same thresholding method, Sadda’s group quantified vessel density (VD) and grey value (GV) of the choriocapillaris in normal subjects with SS-OCTA and found that both numbers were lower in the subfoveal field than that in the four parafoveal sections (19). It should be noted that the thresholding used in these methods was different for each individual image. Recently, we developed a novel method for choriocapillaris visualization and quantification in SS-OCTA datasets (17). The shadowing effect caused by the RPE/BM complex was compensated using the structural information from the same choriocapillaris slab. In addition, the method used histogram normalization and a single threshold determined from a normal database to characterize the flow voids in the en face choriocapillaris angiograms.

The accuracy of flow void measurements from the choriocapillaris can be further improved via image averaging. Even though 1,060 nm wavelength has deeper penetration, the relatively strong scattering of the RPE complex still prevents SS-OCTA from providing high quality images of the choriocapillaris. The limited lateral resolution of current imaging devices (~15–20 um) and the relatively low density of the sampling protocol (with a spacing around 10 um) also reduce image quality in choriocapillaris imaging. In previous studies, averaging of multiple OCTA images largely improved the image quality by reducing noise and annealing discontinuous vessel segments (20,21).

In this paper, we use the term flow deficits rather than flow or signal voids to describe the areas of low signal in the choriocapillaris slabs. It should be noted that the absence of OCTA signal may indicate absence of flow or flow that is below the detection sensitivity of the OCTA system. In addition, we explore the intercapillary distances (ICD), which have been measured to evaluate the uniformity of capillary spacing and used as an indicator of hypoxia in various organs and tissues (22-24). The normal capillary network is a uniform geometrical arrangement of blood vessels with various ICDs, and the distribution has been shown to be approximately log-normal (25). Since larger ICDs between microvessels may cause failure of oxygen diffusion or chronic hypoxia, it is important to identify flow deficits that are larger than the normal intercapillary spacing, and these flow deficits are expected to be more disease-related. It is known from histological studies (26) that the lobule sizes, capillary diameters, and ICDs vary from the central macula to the periphery. The dense capillary meshwork has an ICD ranging from 2 to 20 µm in the posterior pole and a larger ICD of 200–300 µm towards the periphery. This phenomenon was also observed by SS-OCTA imaging in vivo (11,17). This suggests that focusing on the OCTA flow deficits larger than the ICD may represent an effective strategy.

In this paper, we propose to use the averaged ICD as a criterion to remove flow deficits identified by OCTA that are smaller than the normal intercapillary spacing. We demonstrate that this new strategy is able to achieve more accurate estimation of choriocapillaris flow deficits.



All subjects were enrolled at the Bascom Palmer Eye Institute in a prospective OCT imaging study. All the subjects were under dilated exams to identify as normal controls. The Institutional Review Board of the University of Miami Miller School of Medicine approved the study, and informed consent was obtained from all subjects. The study was performed in accordance with the tenets of the Declaration of Helsinki and compliant with the Health Insurance Portability and Accountability Act of 1996.

Image acquisition and scanning protocols

The instrument used in this study was a SS-OCTA system (PLEX® Elite 9000, Carl Zeiss Meditec, Inc., Dublin, CA, USA) as described in our previous study (17). Briefly, it is characterized by a central wavelength of 1,060 nm with a bandwidth of 100 nm, resulting in an A-scan depth of 3.0 mm and a full-width at half maximal (FWHM) axial resolution of ~5 µm in tissue. The lateral resolution at the retinal surface has been estimated at ~16 µm. FastTrac™ motion correction software was used while the images were acquired to minimize the subject motion artifacts. The 3 mm × 3 mm scan pattern was used in this study. It contained 300 A-lines per B-scan and 300 B-scan positions with 4 repeated scans at each fixed location. The complex optical microangiography (OMAGc) algorithm was used to obtain the OCTA images, utilizing variations in both the intensity and phase information between sequential B-scans at the same location to generate the motion signal, which indicates blood flow (1,27). A validated semi-automated segmentation algorithm was applied to identify relevant retinal layers (28), and manual corrections were carried out as necessary to ensure accurate segmentation. A 20 µm thick slab beneath BM was defined as the choriocapillaris slab. A maximum projection was applied on the segmented flow volumes to generate the en face angiograms. Tailing artifacts were removed from the en face choriocapillaris images before further analysis (29). Images were excluded from the study if significant media opacity was present, if signal strength was less than seven as defined by manufacturer, or if there were severe motion artifacts. Four repeated volume scans were acquired from all the enrolled patients to test the influence of averaging on measuring flow deficits of the choriocapillaris.

Compensation of signal attenuation

The signal attenuation caused by the RPE/BM complex was compensated using a strategy previously reported (17). Briefly, the incident light is attenuated when passing through the RPE/BM complex due to its highly scattering property, therefore a shadow is cast beneath, especially in the presence of drusen. The shadowing effect under drusen is observed as decreased signals on both structural and flow en face choriocapillaris images when compared with non-drusen regions. Thus, the summation of structural signal from the same choriocapillaris slab was inverted and used to compensate for the attenuated flow signal in the choriocapillaris image.

Choriocapillaris flow deficits measurement

Flow deficits (known as flow voids in our previous study) were defined as a percentage of the area of the region with flow below a fixed threshold and the area of the entire scanned region. The threshold for flow deficits was determined by one standard deviation (SD) from a normal database (20 subjects at 20–39 years old). This threshold showed the best repeatability in measuring flow deficits both in normal and drusen cases (17).

Removal of small choriocapillaris flow deficits

Figure 1 shows an example of flow deficit measurements from a normal subject. To make the approach applicable to the protocols with different scanning pattern, all the input images were re-sampled from 300 × 300 to 512 × 512 pixels. The structure compensated choriocapillaris angiogram with tailing artifact removal is shown in Figure 1A. One SD threshold from the normal database was applied to isolate the flow deficits and obtain the flow deficit map, which is a binary image (Figure 1B) where the value of one indicates flow deficit. The percentage of flow deficits can be obtained by a summation of all the one values divided by the total scanned area. The overlay (Figure 1C) of the choriocapillaris angiogram and the flow deficit map demonstrates the interplay of capillaries and flow deficits. Different sizes of flow deficits were observed in the flow deficit map (Figure 1B), ranging from a few pixels to dozens of pixels. The histogram of the flow deficit sizes is plotted in Figure 1D, and the distribution shows two modes (30). Following a radial power spectrum analysis (31,32), the valley value (i.e., the dip) shown in Figure 1D of the bimodal histogram can be interpreted as the average intercapillary distance within the CC map. This value is then selected as a cut-off threshold to remove the small flow deficits, which would correspond to flow deficit areas that would not cause deficiency in oxygen diffusion.

Figure 1 An example of the flow deficit measurement procedure using the thresholding method on an en face swept source optical coherence tomography angiography image of the choriocapillaris from a normal subject. (A) Structure compensated choriocapillaris en face angiogram with tailing artifact removed; (B) flow deficit map including all sizes of identified flow deficits; (C) overlaid choriocapillaris angiogram with flow deficits; (D) bi-modal histogram distribution showing the area sizes of flow deficits from which the average intercapillary distance is identified as 12 pixels from the valley value; (E) flow deficits smaller than intercapillary spacing; (F) the flow deficits larger than the intercapillary spacing, which are considered as true flow deficits; (G) the overlaid choriocapillaris angiogram with small flow deficits in purple and true flow deficits in green.

We performed the above procedure on a normal database with twenty young subjects with an age ranging from 20 to 39 years old. Twenty valley values were collected and averaged as a general threshold. The mean valley value was found to be 12 pixels in area size. By considering the flow deficit as a circle in the calculation, the diameter can be obtained which is ~24 µm, representing the averaged ICD that is considered to be within normal intercapillary spacing and within normal oxygen diffusion capability. Figure 1E shows the flow deficits, each with an area with an equivalent diameter smaller than 24 µm. These small flow deficits are removed from the flow deficit map. As a result, the remaining flow deficits (Figure 1F) should provide a depiction of flow deficits that represent oxygen diffusion limited areas. Figure 1G shows an overlay image that includes the choriocapillaris angiogram with removed small flow deficits in purple and the remaining large flow deficits in green.

Image averaging

To validate our method, four repeated scans were collected on each subject. For each imaged eye, angiograms were averaged with 1, 2, 3 and 4 scans, classified as group 1, group 2, group 3 and group 4, respectively. A registration method based on affine and B-spline transformation was utilized to align the repeated scans (33), using the superficial retinal layers as the reference to obtain the transformation parameters. Then, the registered images of each layer (retinal and compensated choriocapillaris) were merged into one image by averaging the images in each group.

Flow deficits with and without the small flow deficits removal were calculated on each group (single image and averaged images). Comparisons were performed between groups with and without the removal of small flow deficits.

Statistical analysis

A paired sample t-test was used to compare the flow deficits percentages between groups, as well as in each group with and without the small flow deficits removal. All statistical analyses were performed using MatlabTM. P values below 0.05 were considered as statistically significant.


Images from seven eyes of seven normal subjects were captured for this study. For each eye, four repeated scans were collected and averaged to test the influence of averaging on the flow deficit measurements with and without removal of the small flow deficits.

Choriocapillaris imaging with averaging

Figure 2 shows an example of retinal and choriocapillaris angiograms in four groups, including a single image and images averaged 2, 3 and 4 times. Generally, the image quality improves progressively with the number of averaged scans (Figure 2B,C,D,E,F,H) and so does the signal to noise ratio. When averaging 4 scans the background noise is significantly reduced and the visualization of the blood vessel networks is improved, showing greater continuity compared with the single image (Figure 2A,E).

Figure 2 Example of retinal and choriocapillaris angiograms from a single image and images averaged 2, 3 and 4 times. (A,B,C,D) Retinal angiograms without averaging and averaged 2, 3 and 4 times; (E,F,G,H) choriocapillaris angiograms without averaging and averaged 2, 3 and 4 times; (I,J,K,L) flow deficit measurements based on a single image and images averaged 2, 3 and 4 times. Purple indicates the small flow deficits that are consistent with normal ICD; green indicates the true flow deficits identified through the procedure, and the yellow percentage indicates the percent of true flow deficits within the red circle. ICD, intercapillary distances.

Flow deficit measurements of the choriocapillaris with and without averaging and removing small flow deficits

The averaged choriocapillaris angiograms (Figure 2F,G,H) show a more continuous meshwork compared to the single image. We calculated the flow deficits on each group using the method described above. To avoid possible offsets at the edges of the registered images caused by variability in fixation, flow deficit percentages were calculated within a circle of diameter 2.5 mm (Figure 2I,J,K,L) centered on the fovea.

Generally, without removing the flow deficits that are with an area of equivalent diameter smaller than 24 um, flow deficits percentage decreased with increased averaging (Figure 2I,J,K,L). Increased averaging results in fewer flow deficits, and the value tends to become stable after averaging more images (Figure 3). Statistically significant differences in flow deficit measurements were found between groups (group 1 vs. group 2: P<0.0001; group 2 vs. group 3: P<0.001; group 3 vs. group 4: P<0.001). After removing the small deficits (≤24 µm in diameter), the flow deficit percentages decreased with increased averaging in all groups. A statistically significant difference was found between group 1 and group 2 (P<0.001), between group 2 and group 3 (P<0.05), and between group 3 and group 4 (P<0.05) after removing the small flow deficits (≤24 µm in diameter). However, the significant difference was decreased compared to without small flow deficits removal.

Figure 3 Box-plot of flow deficits measurement in all four groups.


Flow deficits were defined as regions of non-perfusion or low perfusion, where the flow was below the sensitivity limit of the current OCTA technology. They appeared as dark or weak signals on the OCTA angiograms. Even though SS-OCTA has deeper penetration and weaker light scattering at the RPE, which should reduce potential errors in flow deficit measurements when compared with SD-OCTA, this definition of flow deficits can complicate the identification of these regions by several aspects: e.g., (I) noise characteristics of OCTA imaging can cause small flow voids to be variable, and (II) all normal eyes would contain small flow deficits consistent with the normal intercapillary distances. Our novel strategy for choriocapillaris visualization and quantification demonstrated here attempts to identify and discard a subset of flow voids that appear not to be physiologically relevant and are more likely to correspond to noise.

We have proposed a simple histogram based method to identify the averaged intercapillary spacing of the scanned OCTA en face choriocapillaris angiograms. This method provided an average of 24 µm in equivalent spacing diameter, as determined from a normal database with ages ranging from 20 to 39 years old.

According to a histology study (29), the intercapillary distance varies in different spatial locations within the fundus. An intercapillary distance ranging from 2 to 20 µm has been reported in the posterior pole where there is a dense capillary meshwork; however, the multiple steps necessary for the preparation of a histologic sample preparation, may affect the true distance between capillaries. Adaptive optics (AO) OCTA with a high lateral resolution about 4.7 µm has been adopted for choriocapillaris imaging by Miller’s group (32). Although the field of view was limited to 4 × 2 degrees, the dense meshwork around central macula was clearly observed with a regular lobular pattern. The averaged spacing between choriocapillaris lumens was calculated based on the en face angiogram, at about 39 µm. In another study using OCTA (14), a fast imaging device with a 1.7 MHz A-scan rate was utilized to visualize the choriocapillaris. With this imaging speed, it was possible to have a faster B-scan rate and denser scans with a step size to 4 µm between adjacent A-scans, allowing the observation of the lobular patterns under central macula. A spatial frequency of 25 cycles/mm of the choriocapillaris peak using the radial power spectrum analysis method was reported, resulting in a capillary spacing at about 40 µm. However, current commercial OCTA devices have limited lateral resolution (~15–20 µm) and lower density sampling with a step size of about 10 µm. Specifically, in our study, the device has a lateral resolution of about 16 µm in retinal tissue and sampling space at about 10 µm. The relatively low lateral resolution compared to AO-OCTA (16 vs. 4.7 µm) and large sampling distance (10 vs. 4 µm) are likely to generate choriocapillaris flow images with a dilated capillary meshwork (34). Consequently, the intercapillary spacing would likely be reduced. In our study, a bimodal distribution of the flow deficits was clearly observed in all twenty normal subjects. The averaged valley value from the normal database that resulted in a 24 µm spacing in diameter can be well explained by considering the convolution between OCT probe beam spot size and the true intercapillary spacing.

Repeated scans were acquired on each subject to investigate the influence of averaging (4 groups) on flow deficit measurements. More averaging yielded a lower flow deficit percentage that appeared to become stable after averaging more images. This statistically significant decrease in flow deficit percentage demonstrated the advantages of averaging, which reduced background noise and improved the continuity of blood vessel networks. The flow deficit percentages were significantly reduced (P<0.01) in all groups after removing the small flow deficits (24 µm in diameter). This observation indicates that there may be a fixed bias between the results that are with and without small flow deficits removal. The fixed bias could come from the normal intercapillary spacing and could also be introduced by the system noises. The statistical differences were decreased after the small flow deficits (≤24 µm in diameter) removal, indicating the removal strategy may provide more robust flow deficits measurements with less averaging.

Limitations of this study include a limited sample size of 7 normal subjects with repeated scans. Another limitation is that only 4 repeated scans were acquired for each subject. It could be interesting to investigate results when more than 4 images are averaged. In addition, eyes with choriocapillaris pathologies should also be enrolled in future studies to investigate how the averaging affects the flow deficit measurements and how robust the method of small flow deficits removal can be in different diseases. For instance, in eyes with age-related macular degeneration that usually have large flow deficits, less averaging or no averaging may be necessary to achieve comparable accuracy for flow deficit measurements.

In conclusion, we have proposed a novel method to remove small flow deficits that correspond to a smaller than expected intercapillary spacing, reducing the effect of compounding factors, e.g., system noise and normal intercapillary distance, on the choriocapillaris flow deficit measurements. With this method, fewer repeats for image averaging were required to achieve comparable quantification on the flow deficits based on SS-OCTA imaging. This method should provide more accurate measurements of flow deficits that may help facilitate early diagnosis, monitoring disease progression, response to treatment, and prognosis.


Funding: Research supported by grants from Carl Zeiss Meditec, Inc. (Dublin, CA), the National Eye Institute (R01EY024158, R01EY028753), an unrestricted grant from the Research to Prevent Blindness, Inc., New York, NY, and the National Eye Institute Center Core Grant (P30EY014801) to the Department of Ophthalmology, University of Miami Miller School of Medicine.


Conflicts of Interest: Drs. Gregori, Rosenfeld and Wang received research support from Carl Zeiss Meditec, Inc. Dr. Gregori and the University of Miami co-own a patent that is licensed to Carl Zeiss Meditec, Inc. Dr. Rosenfeld also received additional research support from Genentech, and Tyrogenex. He is a consultant for Achillion Pharmaceuticals, Acucela, Boehringer-Ingelheim, Carl Zeiss Meditec, Cell Cure Neurosciences, Chengdu Kanghong Biotech, Ocunexus Therapeutics, Genentech, Healios K.K, Hemera Biosciences, F. Hoffmann-La Roche Ltd., Isarna Pharmaceuticals, Lin Bioscience, MacRegen Inc, NGM Biopharmaceuticals, Ocunexus, Ocudyne, Tyrogenex, and Unity Biotechnology. Dr. Rosenfeld as has equity interest in Apellis, Digisight, and Ocudyne. Dr. Wang and the Oregon Health & Science University co-own a patent that was licensed to Carl Zeiss Meditec, Inc. and Kowa Inc. Dr. Wang received an innovative research award from Research to Prevent Blindness. He is a consultant to Carl Zeiss Meditec, Insight Photonic Solutions. Drs. Durbin, and de Sisternes are employed by Carl Zeiss Meditec, Inc. Other authors have no conflicts of interest to declare.

Ethical Statement: The Institutional Review Board of the University of Miami Miller School of Medicine approved the study, and informed consent was obtained from all subjects.


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Cite this article as: Zhang Q, Shi Y, Zhou H, Gregori G, Chu Z, Zheng F, Motulsky EH, de Sisternes L, Durbin M, Rosenfeld PJ, Wang RK. Accurate estimation of choriocapillaris flow deficits beyond normal intercapillary spacing with swept source OCT angiography. Quant Imaging Med Surg 2018;8(7):658-666. doi: 10.21037/qims.2018.08.10

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