Predicting the microvascular invasion and tumor grading of intrahepatic mass-forming cholangiocarcinoma based on magnetic resonance imaging radiomics and morphological features
Original Article

Predicting the microvascular invasion and tumor grading of intrahepatic mass-forming cholangiocarcinoma based on magnetic resonance imaging radiomics and morphological features

Shuang Chen1, Yumeng Zhu2, Lijuan Wan1, Shuangmei Zou3#, Hongmei Zhang1#

1Department of Diagnostic Radiology, National Cancer Center/National Clinical Research Center for Cancer/Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China; 2Beijing No. 4 High School International Campus, Beijing, China; 3Department of Pathology, National Cancer Center/National Clinical Research Center for Cancer/Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China

Contributions: (I) Conception and design: S Chen, S Zou, H Zhang; (II) Administrative support: H Zhang; (III) Provision of study materials or patients: S Chen, H Zhang; (IV) Collection and assembly of data: S Chen, Y Zhu, L Wan, H Zhang; (V) Data analysis and interpretation: S Chen, Y Zhu; (VI) Manuscript writing: All authors; (VII) Final approval of manuscript: All authors.

#These authors contributed equally to this work.

Correspondence to: Hongmei Zhang, PhD. Department of Diagnostic Radiology, National Cancer Center/National Clinical Research Center for Cancer/Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, 17 Panjiayuan Nanli, Chaoyang District, Beijing 100021, China. Email: 13581968865@163.com.

Background: Preoperative diagnosis of microvascular invasion (MVI) and tumor grading of intrahepatic mass-forming cholangiocarcinoma (IMCC) using imaging findings can facilitate patient treatment decision-making. This study was conducted to establish and validate nomograms based on magnetic resonance imaging (MRI) radiomics and morphological features for predicting the MVI and tumor grading of IMCC before radical hepatectomy.

Methods: A total of 235 patients with resected IMCC at the Chinese Academy of Medical Sciences and Peking Union Medical College were divided into a training set (n=167) and a validation set (n=68), retrospectively. Clinical data and MRI morphological features were recorded. Univariate and multivariate analyses were conducted to identify the significant features for the prediction of MVI and tumor grading. Radiomics features were extracted from T2-weighted imaging fat-suppressed and diffusion-weighted imaging (DWI). Radiomics signatures (rad_scores) were built based on the least absolute shrinkage and selection operator (LASSO) method. Then, the nomograms were constructed by combining the rad_scores and the significant clinical or MRI morphologic features. The predictive performances for MVI and tumor grading were evaluated by the area under the receiver operating characteristic curve (AUC), calibration, and clinical utility.

Results: Totals of 16 and 9 radiomics features were selected to build the rad_scores for the prediction of MVI and tumor grading for the training and validation set, respectively. The nomogram for the prediction of MVI comprised the morphologic features including number of tumors, tumor margin, and rad_score. For the prediction of tumor grading, the nomogram comprised the number of tumors, tumor necrosis, and rad_score. The best discriminations were observed in the training and validation sets for the MVI nomogram [AUCs of 0.874, 95% confidence interval (CI): (0.822–0.926) and 0.869 (0.783–0955)] and tumor grading nomogram [AUCs of 0.827 (0.763–0.891) and 0.848 (0.759–0.937)]. Decision curve analysis (DCA) further confirmed the clinical utilities of the nomograms.

Conclusions: Nomograms based on MRI radiomics and morphological features can effectively predict the individualized risks of MVI and tumor grading for IMCC.

Keywords: Biomarkers; intrahepatic mass-forming cholangiocarcinoma (IMCC); magnetic resonance imaging (MRI); radiomics; nomogram


Submitted Jan 04, 2023. Accepted for publication Sep 12, 2023. Published online Sep 28, 2023.

doi: 10.21037/qims-23-11


Introduction

The incidence of intrahepatic cholangiocarcinoma (IHC) has risen progressively worldwide (1,2), and the most common morphological subtype is intrahepatic mass-forming cholangiocarcinoma (IMCC) (3,4). Surgical resection is the first-line treatment option; however, even though surgical techniques have greatly improved in recent decades, patients still have a poor outcome, with a 5-year survival rate of approximately 30–35% (5). The poor outcome is mainly related to the high postoperative recurrence rate, with recurrence occurring in approximately 50–70% of cases (6).

Microvascular invasion (MVI) and tumor grading are regarded as 2 of the most important prognostic factors that strongly influence not only tumor recurrence but also patients’ survival (7-10). MVI refers to the presence of tumor cells within the within a vascular lumen which is covered by endothelium that is visible only by microscopy (11). MVI is a potential source of intrahepatic metastases and distant metastatic spread, and also is associated with aggressive and progressive tumor behaviors (12). It has been accepted that for patients with a high probability of MVI, large safety margins are needed at surgical resection (13). Considering the strong correlation between tumor grading and lymph node metastases, although it may not be required by all patients, the high tumor grading of IMCC should prompt surgeons to consider portal lymphadenectomy (14). Therefore, the early and precise detection of MVI and tumor grading before treatment is necessary to provide patients with appropriate surgical decisions and prognoses. Generally, biopsy is not a satisfactory method for the diagnosis of MVI or tumor grading preoperatively because of the inadequate tumor specimen obtained and its invasive nature (15).

Medical imaging has provided a noninvasive method for the preoperative assessment of IHC. Specifically, magnetic resonance imaging (MRI) is a common imaging method for IMCC. Some studies have evaluated the correlations between MRI morphological features and MVI for IMCC, and large tumor size and intrahepatic duct dilatation were reported as independent predictors of MVI (16-18). However, the interobserver agreements of MRI morphological features lack further analyses, and the evaluation of these features is highly subjective and variable. Additionally, due to the limitation of the number of patients, those studies lacked sufficient validation. Radiomics can extract high-throughput imaging features from biomedical images and convert them into mineable data for quantitative analysis, with the aim of predicting the pathological characteristics of tumors (19). Recently, MRI-based radiomics nomograms have been found to be helpful in predicting MVI in preliminary studies (18,20). With the increase of the radiomics signatures (rad_scores), the possibility of MVI has increased gradually (18,20). To date, few studies have described the relationship between tumor grading in IMCC and MRI-based radiomics features.

Therefore, this study aimed to develop and validate noninvasive MRI-based radiomics nomograms to predict the biological MVI and tumor grading of IMCC, which are essential for a complete understanding of the stratification of the tumor and to guide more accurate personalized treatment in the future. We present this article in accordance with the TRIPOD reporting checklist (available at https://qims.amegroups.com/article/view/10.21037/qims-23-11/rc).


Methods

The study was conducted in accordance with the Declaration of Helsinki (as revised in 2013). The study was approved by the Ethics Committee of the National Cancer Center/Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, and the requirement for individual consent for this retrospective analysis was waived.

Eligibility criteria and patients

A total of 285 consecutive IHC patients who underwent hepatic resection at the Chinese Academy of Medical Sciences and Peking Union Medical College were enrolled in the study from 1 February 2010 to 2 February 2022. The inclusion criteria were as follows: (I) patients with a pathological confirmation of IHC from liver resection specimens; and (II) patients who underwent a preoperative MRI examination before surgery at the Chinese Academy of Medical Sciences and Peking Union Medical College. The excluded patients met the following criteria: (I) patients under neoadjuvant treatment before surgery (n=20); (II) other types of IHC (n=15; 7 for periductal-infiltrating type and 8 for intraductal growing type); (III) patients with positive resection margins (n=10); and (IV) inadequate imaging quality for analysis (n=5). Ultimately, 235 eligible patients [median age, 60 years; interquartile range (IQR), 53–66; age range, 36–80 years; 146 men] were enrolled in our study and randomly divided into training (n=167) and validation (n=68) cohorts at a ratio of around 5:2 (Figure 1). The same cohort was used to predict both MVI status and tumor grading. The median time between the MRI examination and hepatectomy was 15 days (IQR, 9–21 days). The tumor specimens of all patients were obtained through pathological detection for MVI and tumor grading postoperatively.

Figure 1 Flow diagram showing the patient selection protocol and the inclusion and exclusion criteria. IHC, intrahepatic cholangiocarcinoma; MRI, magnetic resonance imaging; IMCC, intrahepatic mass-forming cholangiocarcinoma; MVI, microvascular invasion.

MRI protocols

MRI examinations were acquired with 8-channel phased array coil 3.0-T MRI scanners (Discovery MR 750 for 43 patients, SIGNA Excite HDxt for 92 patients, SIGNA Pioneer for 46 patients, and SIGNA Architect for 25 patients; GE Healthcare, Waukesha, WI, USA; Magnetom Spectra for 17 patients, and Magnetom Prisma for 12 patients; Siemens, Erlangen, Germany). The patients fasted for at least 4 hours before examination. All patients underwent routine abdominal MRI performed using the following sequences: non-CE T1-weighted in-phase and opposed-phase, T2 weighted imaging-fat-suppressed (T2WI-FS) on transverse, and T2WI on coronal. Diffusion-weighted imaging (DWI) was obtained at b values of 0 and 800 s/mm2. A total of 157 patients received 0.2 mmol/kg body weight of extracellular gadolinium contrast agent (Magnevist; Bayer AG, Leverkusen, Germany) at an infusion rate of 1.5–2 mL/s; the other patients received gadoxetic acid (Primovist; Bayer AG) injected at a dose of 0.025 mmol/kg at an infusion rate of 1 mL/s. Both were followed by a wash with 20 mL of 0.9% physiological saline flush, after which multiphasic dynamic images were obtained. The images in the arterial phase (AP), portal venous phase (PVP), and delayed phase (DP; for extracellular gadolinium contrast agents) or transitional phase (for gadoxetic acid) were acquired during suspended respiration at 25–35, 60–75, and 150–180 s, respectively, on transverse. Additionally, the hepatobiliary phase was acquired 10–15 minutes after the injection of gadoxetate disodium. For patients with cirrhosis, a 20-minute hepatobiliary phase is preferred. The last phase was scanned in the coronal direction after the transverse scan. Detailed technical specifications are shown in Table S1.

Preoperative information collecting

Preoperative information mainly included 20 items that were categorized into the following groups: (I) the standard demographics of the patients (including age and sex); (II) 7 laboratory variables, including hepatitis Be antigen (HBeAg), α-fetoprotein (AFP), carbohydrate antigen 19-9 (CA19-9), carcinoembryonic antigen (CEA), alanine aminotransferase (ALT), aspartate aminotransferase (AST), and gamma-glutamyl transpeptidase (GGT); and (III) 11 MRI morphological features, including tumor maximum diameter, number of tumors, tumor margin, necrosis, bile duct dilatation, capsule retraction, peritumoral enhancement, DWI signal characteristics, AP enhancement patterns, targetoid appearance, and lymph node status. The detailed classifications and definitions of each MRI feature are shown in Table S2. All MRI features were independently evaluated on a picture archiving and communication system by 2 radiologists (radiologists 1 and 2, with 10 and 8 years of experience in abdominal imaging, respectively). Any discrepancy was discussed to reach a final consensus.

Radiomic feature extraction

Radiomics features were extracted from T2WI-FS and DWI (b=800 s/mm2) sequences. Both sequences were resampled and aligned to the same resolution, spacing, and position by ITK-SNAP (http://www.itksnap.org) to offset the interference caused by the uneven spatial resolution. The trilinear interpolation algorithm was used to resample the T2WI/FS and DWI with a new image resolution of 1 mm × 1 mm × 1 mm. Tumor volumes of interest (VOIs) covering the total volume of tumor tissue (hyperintense signal intensity on T2WI-FS, and restricted diffusion on DWI) were manually segmented by radiologist 1 on transverse slices using ITK-SNAP. VOIs also included cystic necrotic regions, which are considered one of the manifestations of tumor biological behaviors (21). The original MRI images and VOIs were saved as medical digital imaging files in Neuroimaging Informatics Technology Initiative (NII) format. To assess the intraobserver repeatability and reliability of the extracted features, 70 patients (approximately 30% of the total patients) were randomly selected, and the same segmentation procedure was repeated 1 month after the first evaluation by the same radiologist to reduce recall bias. The intraclass correlation coefficient (ICC) was used to assess the reproducibility of the radiomics features (22). All image segmentations were reviewed by radiologist 2. The PyRadiomics software package (version 3.0.1; http://www.radiomics.io/pyradiomics.html) was used to extract radiomics features from VOIs (23). The radiomics features were obtained on the original images using the wavelet and Laplacian of Gaussian filters with sigma values of 1.0, 2.0, 3.0, 4.0, and 5.0. A single-level directional discrete wavelet transform with high-pass (H) and low-pass (L) filters was used for wavelet transform (24). In total, 8 wavelet-decomposition images were created from each MRI sequence input, including HHH, HHL, HLH, HLL, LHH, LHL, LLH, and LLL. Finally, we extracted 1,132 radiomic features, including first-order statistical features (234 features), shape features (14 features), gray-level co-occurrence matrix (GLCM) features (286 features), gray-level run-length matrix (GLRLM) features (208 features), gray-level size zone matrix (GLSZM) features (208 features), and gray-level dependence matrix (GLDM) features (182 features), from the original images and wavelet-transformed images. In the process of MRI characteristic evaluation and VOI delineation, both radiologists were aware of the diagnosis of IMCC but were blinded to the clinicopathologic traits. For multinodular tumors (including satellite nodules and intrahepatic metastasis), only the targeted lesion (the largest nodule) was selected for further analysis. The average time needed for segmentation was 7 minutes (range, 4–10 minutes). The radiomics workflow is depicted in Figure 2.

Figure 2 Radiomics pipeline of the study. VOI, volume of interest; T2WI-FS, T2 weighted imaging-fat-suppressed; DWI, diffusion-weighted images; GLCM, gray-level co-occurrence matrix; GLSZM, gray-level size zone matrix; GLRLM, gray-level run-length matrix; GLDM, gray-level dependence matrix; ICC, intraclass correlation coefficient; MRMR, minimum redundancy maximum relevance; LASSO, least absolute shrinkage and selection operator; MVI, microvascular invasion; ROC, receiver operating characteristic.

Feature selection

The VOIs were saved as label maps and then used to obtain the radiomics features. To render the parameters of different dimensions comparable, the values of the extracted features in the training set were normalized by the Z score, and the mean and standard deviation (SD) values based on the training set were used to standardize the values of the validation set. We followed a 4-step procedure to identify robust radiomic features (Figure S1). First, we used ICC to evaluate the repeatability of radiomics features. The features with ICC ≥0.8 were chosen as having high reproducibility for further analysis and the other features were discarded as low reproducibility. Second, Spearman’s analysis was used to calculate the correlation between radiomics features in a single sequence (T2WI/FS or DWI). Features with |ρ| ≥0.9 were defined as highly correlated. If correlation factor was high, any of the features were randomly selected for further analysis, and the other features were discarded. Third, minimum redundancy maximum relevance (MRMR) was used to remove the redundant and irrelevant features in the training set (30 features were retained). Finally, we used least absolute shrinkage and selection operator (LASSO) regression in the training set to select the optimized features with nonzero coefficients with 10-fold cross-validation.

Models construction and evaluation

The clinical data, and MRI morphological features were subsequently compared by univariate logistic analysis. The clinical data included the standard demographics of the patients (age and sex), and laboratory variables (HBeAg, AFP, CA19-9, CEA, ALT, AST, and GGT). Significant features with P values <0.05 were included in the multivariable logistic regression analysis. The clinical models were established based on significant features of demographics, laboratory, and MRI morphological features. The radiomics models were built based on the selected radiomics features. Then, the rad_score of each patient was calculated based on a linear combination of the selected features with the coefficients weighted by the LASSO regression. The independent features in the clinical models and rad_scores were combined to establish nomogram models for the prediction of MVI and tumor grading, respectively. The validation group was used to test the internal validation of the nomograms. A nomogram score was calculated for each patient in the training and validation sets.

Performance and validation of the prediction model

The areas under the receiver operating characteristic (ROC) curve (AUCs) were used to predict the accuracy of each model. The difference in the ROC curves between various models were assessed by the DeLong test. The sensitivity, specificity, and positive predictive value (PPV), and negative predictive value (NPV) of the predictive models were calculated by cross-tabulation. The model calibration was assessed by using calibration curves with the Hosmer-Lemeshow test. Additionally, decision curve analysis (DCA) was used to evaluate the clinical utility of the prediction model by computing the net benefits for a range of threshold probabilities.

Histopathologic analysis

The pathological examination results were recorded according to the hospital clinical records. The pathological slices of IMCC were subjected to postoperative hematoxylin and eosin (H&E) staining. MVI was defined as the presence of nested clusters of cancer cells within the endothelium-covered vessels diagnosed only by microscopy (25). The histologic grading of IMCC was divided into 3 categories: G1 (well differentiated), G2 (moderately differentiated), and G3 (poorly differentiated) (26). In our study, we defined G1 and/or G2 as “low grading” and G3 as “high grading”.

Statistical analysis

Clinical, histopathologic, and MRI morphological features are expressed as numbers (frequency %) or the mean ± SD as appropriate. The Mann-Whitney U test or unpaired t-test was used for continuous variables according to the normal distribution test, and the chi-square test or Fisher’s exact test was used for categorical variables. Interobserver agreement was analyzed for each qualitative MRI feature by the κ statistic. The level of agreement was assessed as slight (κ of 0.01 to 0.20), fair (0.21 to 0.40), moderate (0.41 to 0.60), good (0.61 to 0.80), and excellent (0.81 to 1). Associated odds ratios (ORs) and 95% confidence intervals (CIs) were estimated. Statistical significance was defined as P values <0.05 (2-tailed). Statistical analysis was carried out by SPSS 23.0 (IBM Corp., Armonk, NY, USA) and R statistical software (version 4.0.3, https://www.r-project.org).


Results

Interobserver agreements

The percentage of MRI morphological features identified for feature classification by the 2 radiologists as well as their interobserver agreements for each imaging feature are shown in Table S3. The κ values for MRI morphological features were good to excellent (κ=0.634–0.888).

Clinical and MRI characteristics of the patients

A total of 235 patients were enrolled in this study, among whom 167 patients (MVI+ =80, MVI− =87; high grading =103, low grading =64) were enrolled in the training set. In the validation set, 68 patients were enrolled, including 29 patients with MVI+, 39 with MVI−, 36 with high grading and 32 with low grading, showing no significant difference in tumor pathological behaviors in the distribution among patients (P=0.464 for MVI; P=0.217 for tumor grading). Additionally, there were no significant differences in clinical and MRI characteristics between the training and validation sets except for AFP (P=0.014). The demographic and tumor characteristics are summarized in Table 1.

Table 1

Clinical and radiological characteristics in the training and validation sets

Variables Training set (n=167) Validation set (n=68) P-Inter value
MVI (+), n=80 MVI (−), n=87 P-Intra value High
grade, n=103
Low grade, n=64 P-Intra value MVI (+), n=29 MVI (−), n=39 P-Intra value High
grade, n=36
Low grade, n=32 P-Intra value
Age (year) 59±9.7 60±8.7 0.833 59±9.6 59±8.7 0.890 59.0±9.2 60.3±8.9 0.539 58.8±8.5 61.1±9.6 0.621 0.120
Sex 0.328 0.916 0.841 0.773 0.266
   Male 51 (63.8) 49 (56.3) 62 (60.2) 38 (59.4) 20 (69.0) 26 (66.7) 27 (75.0) 19 (59.4)
   Female 29 (36.2) 38 (43.7) 41 (39.8) 26 (40.6) 9 (31.0) 13 (33.3) 9 (25.0) 13 (40.6)
HBsAg 0.965 0.053 0.904 0.511 0.662
   Positive 26 (32.5) 28 (32.2) 39 (37.9) 15 (23.4) 10 (34.5) 14 (35.9) 14 (38.9) 10 (31.2)
   Negative 54 (67.5) 59 (67.8) 64 (62.1) 49 (76.6) 19 (65.5) 25 (64.1) 22 (61.1) 22 (68.8)
CA19-9, U/mL 0.028 0.477 0.013 0.219 0.400
   >37 53 (66.2) 43 (49.4) 57 (55.3) 39 (60.9) 20 (69.0) 15 (38.5) 16 (44.4) 19 (59.4)
   ≤37 27 (33.8) 44 (50.6) 46 (44.7) 25 (39.1) 9 (31.0) 24 (61.5) 20 (55.6) 13 (40.6)
AFP, ng/mL 0.200 0.834 0.014
   >20 9 (11.2) 5 (5.7) 9 (8.7) 5 (7.8) 0 (0) 0 (0) 0 (0) 0 (0)
   ≤20 71 (88.8) 82 (94.3) 94 (91.3) 59 (92.2) 29 (100.0) 39 (100.0) 36 (100.0) 32 (100.0)
CEA, ng/mL 0.051 0.182 0.721 0.931 0.852
   >5 22 (27.5) 13 (14.9) 25 (24.3) 10 (15.6) 7 (24.1) 8 (20.5) 8 (22.2) 7 (21.9)
   ≤5 58 (72.5) 74 (85.1) 78 (75.7) 54 (84.4) 22 (75.9) 31 (79.5) 28 (77.8) 25 (78.1)
ALT, U/L 0.753 0.796 0.887 0.575 0.373
   >40 15 (18.7) 18 (20.7) 21 (20.4) 12 (18.7) 7 (24.1) 10 (25.6) 10 (27.8) 7 (21.9)
   ≤40 65 (81.3) 69 (79.3) 82 (79.6) 52 (81.3) 22 (75.9) 29 (74.4) 26 (72.2) 25 (78.1)
AST, U/L 0.534 0.672 0.940 0.092 0.695
   > 40 11 (13.7) 15 (17.2) 17 (16.5) 9 (14.1) 5 (17.2) 7 (17.9) 9 (25.0) 3 (9.4)
   ≤40 69 (86.3) 72 (82.8) 86 (83.5) 55 (85.9) 24 (82.8) 32 (82.1) 27 (75.0) 29 (90.6)
GGT 0.088 0.125 0.025 0.726 0.979
   > 55 37 (46.2) 29 (33.3) 36 (35.0) 30 (46.9) 16 (55.2) 11 (28.2) 15 (41.7) 12 (37.5)
   ≤55 43 (53.8) 58 (66.7) 67 (65.0) 34 (53.1) 13 (44.8) 28 (71.8) 21 (58.3) 20 (62.5)
Tumor diameter, cm 0.009 0.051 0.418 0.100 0.139
   >5 51 (63.8) 38 (43.7) 61 (59.2) 28 (43.7) 14 (48.3) 15 (38.5) 12 (33.3) 17 (53.1)
   ≤5 29 (36.2) 49 (56.3) 42 (40.8) 36 (56.3) 15 (51.7) 24 (61.5) 24 (66.7) 15 (46.9)
Numbers of tumor 0.001 0.009 0.022 0.109 0.081
   Single 49 (61.3) 79 (90.8) 72 (69.9) 56 (87.5) 22 (75.9) 37 (94.9) 29 (80.6) 30 (93.8)
   Multiple 31 (38.7) 8 (9.2) 31 (30.1) 8 (12.5) 7 (24.1) 2 (5.1) 7 (19.4) 2 (6.2)
Tumor margin <0.001 0.397 0.002 0.438 0.858
   Infiltrative 62 (77.5) 31 (35.6) 60 (58.3) 33 (51.6) 22 (75.9) 15 (38.5) 18 (50.0) 19 (59.4)
   Smooth 18 (22.5) 56 (64.4) 43 (41.7) 31 (48.4) 7 (24.1) 24 (61.5) 18 (50.0) 13 (40.6)
Necrosis 0.304 0.007 0.841 <0.001 0.461
   Absent 55 (68.8) 66 (75.9) 67 (65.0) 54 (84.4) 20 (69.0) 26 (66.7) 17 (47.2) 29 (90.6)
   Present 25 (31.2) 21 (24.1) 36 (35.0) 10 (15.6) 9 (31.0) 13 (33.3) 19 (52.8) 3 (9.4)
Bile duct dilatation 0.301 0.713 0.106 0.557 0.104
   Absent 52 (65.0) 63 (72.4) 72 (69.9) 43 (67.2) 17 (58.6) 30 (76.9) 26 (72.2) 21 (65.6)
   Present 28 (35.0) 24 (27.6) 31 (30.1) 21 (32.8) 12 (41.4) 9 (23.1) 10 (27.8) 11 (34.4)
Hepatic capsule retraction 0.292 0.398 0.240 0.193 0.240
   Absent 19 (23.7) 27 (31.0) 26 (25.2) 20 (31.2) 10 (34.5) 19 (48.7) 18 (50.0) 11 (34.4)
   Present 61 (76.3) 60 (69.0) 77 (74.8) 44 (68.8) 19 (65.5) 20 (51.3) 18 (50.0) 21 (65.6)
Peritumoral enhancement 0.586 0.979 0.322 0.575 0.232
   Absent 52 (65.0) 60 (69.0) 69 (67.0) 43 (67.2) 20 (69.0) 31 (79.5) 28 (77.8) 23 (71.9)
   Present 28 (35.0) 27 (31.0) 34 (33.0) 21 (32.8) 9 (31.0) 8 (20.5) 8 (22.2) 9 (28.1)
DWI signal characteristics 0.526 0.107 0.583 0.702 0.441
   Diffuse hypo-enhancement 37 (46.2) 36 (41.4) 40 (38.8) 33 (51.6) 10 (34.5) 16 (41.0) 13 (36.1) 13 (40.6)
   Diffuse hyper-enhancement 43 (53.8) 51 (58.6) 63 (61.2) 31 (48.4) 19 (65.5) 23 (59.0) 23 (63.9) 19 (59.4)
AP enhancement pattern 0.234 0.001 0.014 0.910 0.338
   Diffuse hypo-enhancement 13 (16.3) 9 (10.3) 11 (10.7) 11 (17.2) 9 (31.0) 3 (7.7) 7 (19.4) 5 (15.6)
   Rim-enhancement 60 (75.0) 64 (73.6) 83 (80.6) 41 (64.1) 18 (62.1) 26 (66.7) 23 (63.9) 21 (65.6)
   Diffuse hyper-enhancement 7 (8.7) 14 (16.1) 9 (8.7) 12 (18.7) 2 (6.9) 10 (25.6) 6 (16.7) 6 (18.8)
Targetoid appearance 0.864 0.069 0.734 0.586 0.667
   Absent 13 (16.3) 15 (17.2) 13 (12.6) 15 (23.4) 5 (17.2) 8 (20.5) 6 (16.7) 7 (21.9)
   Present 67 (83.7) 72 (82.8) 90 (87.4) 49 (76.6) 24 (82.8) 31 (79.5) 30 (83.3) 25 (78.1)
Lymph node status 0.012 0.104 0.003 0.147 0.098
   Positive 35 (43.7) 22 (25.3) 40 (38.8) 17 (26.6) 12 (41.4) 4 (10.3) 11 (30.6) 5 (15.6)
   Negative 45 (56.3) 65 (74.7) 63 (61.2) 47 (73.4) 17 (58.6) 35 (89.7) 25 (69.4) 27 (84.4)
Rad_score, median (interquartile range) 0.639 (−0.122, 1.678) −1.102 (−1.834, 0.221) <0.001 1.132 (0.472, 1.921) −0.258 (−1.246, 0.595) <0.001 0.661 (−0.012, 1.765) −0.922 (−1.380, 0.548) <0.001 1.214 (0.668, 1.597) −0.169 (−0.566, 0.879) <0.001

Categorical variables are expressed as frequency with percentages in parentheses. , the mean ± standard deviation. Qualitative variables are analyzed using Pearson’s χ2 test or Fisher’s exact test as appropriate, and quantitative variables are analyzed using the independent t-test. P-Intra is the result of univariate analyses between the MVI+ and MVI− groups, high-grade and low-grade groups; P-Inter value represents the comparisons of characteristics between training and validation set. MVI, microvascular invasion; HBsAg, hepatitis Be antigen; CA19-9, carbohydrate antigen 19-9; AFP, α-fetoprotein; CEA, carcinoembryonic antigen; ALT, alanine aminotransferase; AST, aspartate aminotransferase; GGT, gamma-glutamyl transpeptidase; DWI, diffusion-weighted imaging; AP, arterial phase; rad_score, radiomics score.

Selection of predictive factors

In univariable logistic regression analysis, 6 and 2 variables were significantly associated with an increased risk for MVI and tumor grading, respectively (Table 2). Multivariable logistic regression analysis identified number of tumors (P=0.002, OR =4.590, 95% CI: 1.736–12.136) and tumor margin (P<0.001, OR =5.472, 95% CI: 2.538–11.797) as independent predictors of MVI. For tumor grading, number of tumors (P=0.022, OR =2.752, 95% CI: 1.201–5.947) and tumor necrosis (P=0.016, OR =2.156, 95% CI: 1.157–6.547) were identified as independent risk factors in multivariable logistic regression analysis (Table 2). These independent risk factors were used for clinical models’ construction for the prediction of MVI and tumor grading.

Table 2

Univariate and multivariable logistic regression analyses for selecting clinical and radiological features of model development of the training set

Variables Univariate analysis Multivariate analysis
Odds ratio (95% CI) P value Odds ratio (95% CI) P value
MVI-status
   CA19-9 (>37 vs. ≤37 U/mL) 2.009 (1.074–3.755) 0.029* 1.245 (0.566–2.742) 0.586
   CEA (>5 vs. ≤5 ng/mL) 2.159 (1.003–4.649) 0.049* 1.216 (0.479–3.082) 0.681
   Tumor diameter (>5 vs. ≤5 cm) 2.268 (1.217–4.225) 0.010* 1.198 (0.553–2.598) 0.647
   Number of tumors (multiple vs. single) 6.247 (2.657–14.691) <0.001* 4.590 (1.736–12.136) 0.002*
   Tumor margin (infiltrative vs. smooth) 6.222 (3.140–12.331) <0.001* 5.472 (2.538–11.797) <0.001*
   Lymph node status (positive vs. negative) 2.314 (1.200–4.464) 0.012* 1.182 (0.522–2.680) 0.688
Tumor grading
   Numbers of tumor (multiple vs. single) 3.014 (1.285–7.066) 0.011* 2.752 (1.201–5.947) 0.022*
   Necrosis (present vs. absent) 2.901 (1.321–6.374) 0.008* 2.156 (1.157–6.547) 0.016*

*, P<0.05. CI, confidence interval; MVI, microvascular invasion; CA19-9, carbohydrate antigen 19-9; CEA, carcinoembryonic antigen.

Feature selection and construction of radiomics models

Each MRI sequence contained 1,132 features, for a total of 2,264 features (T2WI-FS and DWI). Finally, 16 radiomics features (11 from T2WI-FS, 5 from DWI) for MVI prediction and 9 radiomics features (6 from T2WI-FS, 3 from DWI) for tumor grading detection were selected with nonzero coefficients with optimal regulation weights λ of 0.0398 and 0.0588, respectively, under the 1-SE criterion, and rad_scores were constructed (Figure 3). The selected radiomics features and their corresponding coefficients are detailed in Table S4. Figure S2 shows the heatmap of the selected radiomics features and scatter plots of the rad_scores for the MVI and tumor grading of IMCC in the training and validation sets. These represent the values of the rad_scores for all patients. The rad_scores showed statistically significant differences between MVI+ and MVI− and between high grading and low grading in the training and validation sets (all P<0.001) (Table 1). The rad_score yielded AUCs of 0.806 (95% CI: 0.742–0.870) in the training set and 0.783 (95% CI: 0.674–0.893) in the validation set for the prediction of MVI. For the prediction of tumor grading, the AUCs were 0.806 (95% CI: 0.737–0.874) and 0.779 (95% CI: 0.664–0.894) in the training and validation sets, respectively (Table 3).

Figure 3 Feature selection with the LASSO regression model. The LASSO model’s tuning parameter (λ) selection used 10-fold cross-validation via minimum criterion (A) and (C). Dotted vertical lines were drawn at the optimal values by using the minimum criteria and the 1 standard error of the minimum criteria (the 1-SE criteria). LASSO coefficient profile plot with different log (λ) was shown. The vertical dashed lines represent 16 radiomics features for MVI prediction (B) and 9 radiomics features for tumor grading prediction (D) with nonzero coefficients selected with the optimal λ value. LASSO, least absolute shrinkage and selection operator; MVI, microvascular invasion.

Table 3

Diagnostic performance of different models for predicting MVI and tumor grade in training and validation sets

Model AUC Accuracy, % Sensitivity, % Specificity, % PPV, % NPV, %
MVI
   Training set
    Clinical model 0.787
(0.716, 0.857)
71.26
(63.76, 77.99)
83.75
(73.82, 91.05)
59.77
48.71, 70.15)
65.69
(55.63, 74.81)
80.00
(68.23, 88.90)
    Radiomics model 0.806
(0.742, 0.870)
71.26
(63.76, 77.99)
71.25
(60.05, 80.82)
71.26
(60.57, 80.46)
69.51
(58.36, 79.20)
72.94
(62.21, 82.01)
    Nomogram model 0.874
(0.822, 0.926)
77.25
(70.13, 83.37)
73.75
(62.71, 82.96)
80.46
(70.57, 88.19)
77.63
(66.62, 86.40)
76.92
(66.91, 85.11)
   Validation set
    Clinical model 0.738
(0.618, 0.858)
69.12
(56.74, 79.76)
82.76
(64.23, 94.15)
58.97
(42.10, 74.43)
60.00
(43.33, 75.14)
82.14
(63.11, 93.93)
    Radiomics model 0.783
(0.674, 0.893)
69.12
(56.74, 79.76)
62.07
(42.26, 79.31)
74.36
(57.87, 86.96)
64.29
(44.06, 81.36)
72.50
(56.11, 85.40)
    Nomogram model 0.869
(0.783, 0.955)
79.41
(67.88, 88.26)
75.86
(56.46, 89.70)
82.05
(66.47, 92.46)
75.86
(56.46, 89.70)
82.05
(66.47, 92.46)
Tumor grading
   Training set
    Clinical model 0.650
(0.565, 0.734)
63.47
(55.68, 70.78)
55.34
(45.22, 65.14)
76.56
(64.31, 86.25)
79.17
(67.98, 87.84)
51.58
(41.10, 61.96)
    Radiomics model 0.806
(0.737, 0.874)
74.25
(66.92, 80.70)
85.44
(77.12, 91.61)
56.25
(43.28, 68.63)
75.86
(67.04, 83.32)
70.59
(56.17, 82.51)
    Nomogram model 0.827
(0.763, 0.891)
76.65
(69.49, 82.84)
85.44
(77.12, 91.61)
62.50
(49.51, 74.30)
78.57
(69.81, 85.76)
72.73
(59.04, 83.86)
   Validation set
    Clinical model 0.734
(0.614, 0.854)
70.59
(58.29, 81.02)
58.33
(40.76, 74.49)
84.38
(67.21, 94.72)
80.77
(60.65, 93.45)
64.29
(48.03, 78.45)
    Radiomics model 0.779
(0.664, 0.894)
72.06
(59.85, 82.26)
80.56
(63.98, 91.81)
62.50
(43.69, 78.90)
70.73
(54.46, 83.87)
74.07
(53.71, 88.89)
    Nomogram model 0.848
(0.759, 0.937)
73.52
(61.42, 83.50)
77.78
(60.85, 89.88)
68.75
(49.99, 83.88)
73.68
(56.90, 86.60)
73.33
(54.11, 87.72)

Data in parentheses are 95% confidence intervals. MVI, microvascular invasion; AUC, area under the receiver operating characteristic curve; PPV, positive predictive value; NPV, negative predictive value.

Performance and comparison of the nomograms

Nomograms were constructed by incorporating significant MRI features and the rad_scores (Figure 4). All of the calibration curves for the nomograms showed that the predicted probabilities of the nomogram were closely aligned with the actual MVI and tumor grading estimates, with P values of 0.895 and 0.451 in the training set, respectively (Figure S3). The AUCs of the nomogram for predicting MVI were 0.874 (95% CI: 0.822–0.926) for the training set and 0.869 (95% CI: 0.783–0.955) for the validation set, whereas the AUCs of the nomogram for predicting tumor grading were 0.827 (95% CI: 0.763–0.891) for the training set and 0.848 (95% CI: 0.759–0.937) for the validation set (Table 3). Furthermore, the nomograms had significantly higher AUCs than the clinical models in both the training set (MVI, 0.874 vs. 0.787, P<0.001; tumor grading, 0.827 vs. 0.650, P<0.001) and validation set (MVI, 0.869 vs. 0.738, P=0.008; tumor grading, 0.848 vs. 0.734, P=0.002) for the prediction of both MVI and tumor grading (Figure 5, Table S5). The AUC difference between each model is provided in Table S5. The nomogram score for each patient is shown in Figure S4. The corresponding accuracy, sensitivity, specificity, PPV, and NPV are presented in Table 3.

Figure 4 Development of nomograms. (A) The nomogram to predict MVI developed from tumor number, tumor margin status and radiomics signature (rad_score) of the training set. (B) The nomogram to predict high tumor grade developed from the tumor number, necrosis and rad_score of the training set for intrahepatic mass-forming cholangiocarcinoma. MVI, microvascular invasion.
Figure 5 ROC curves. Graph shows the receiver operating characteristic curve of the radiomic model (blue), clinical model (red), and nomogram model (green) for MVI differentiation, for the training (A) and validation set (B). The ROC curves of the radiomic model (blue), clinical model (red), and nomogram model (green) for tumor grading prediction, for the training (C) and validation set (D), respectively. AUC, area under the receiver operating characteristic curve; ROC, receiver operating characteristic; MVI, microvascular invasion.

Clinical utility

DCA was performed for the nomograms for predicting the presence of MVI and tumor grading, which reflected that the clinical utility and was presented in the training set. As shown in Figure S5, using the nomogram and rad_scores for MVI prediction added more benefit than using the “treat-all strategy” or “treat-none strategy” within a certain range of thresholds (the range of the radiomics model and nomogram was between 10% and 95%). Similar results were found in the prediction of tumor grading (radiomics model, between 10% and 95%; nomogram, >10%).


Discussion

In our study, we constructed 2 nomograms incorporating the rad_scores and MRI morphological risk factors for the prediction of MVI and tumor grading of IMCC. Our findings demonstrated that the radiomics features and MRI morphological features had an acceptable ability to discriminate the pathological features of the tumor. The calibration curves and DCA showed the good clinical utility of these easy-to-use nomogram prediction models for MVI and tumor grading.

The rad_scores based on T2WI-FS and DWI showed better performance outcomes (AUCs of 0.783 and 0.806, respectively) in the prediction of MVI than the clinical model (AUCs of 0.787 and 0.738, respectively) in the study. The nomogram combining rad_scores and significant MRI morphological features had the highest diagnostic performance for the prediction of MVI, with AUCs of 0.874 and 0.869 in the training and validation sets, respectively. Zhou et al. (20) utilized a set of 7 wavelet features based on gadolinium ethoxybenzyl diethylenetriamine pentaacetic acid (Gd-DTPA)-enhanced MRI for the prediction of MVI, and the radiomics model reached AUCs of 0.850–0.873. Qian et al. (18) established a nomogram incorporating intrahepatic duct dilatation, tumor size, and rad_score (DWI, T2WI-FS, T1WI, AP, PVP, and DP) with an AUC range of 0.819 to 0.953, and the diagnostic performance was similar to that of our nomogram.

To date, to the best of our knowledge, no study has employed radiomics features based on MRI to predict tumor grading of IMCC. In our study, the radiomics model achieved AUCs of 0.806 and 0.779 in the training and validation sets, respectively, and the nomogram achieved the best predictive ability (AUCs of 0.827 and 0.848, respectively). Rad_scores based on positron emission tomography/computed tomography (PET/CT) (27) and ultrasound (28) have been used to preoperatively predict tumor grading, with AUCs ranging from 0.71 to 0.78. However, the case number was limited (74 to 128 patients) and a validation test was lacking, which may have led to a possible risk of data overfitting. We hypothesized that the radiomics features of MRI are superior to those of other examination devices, but further validation is needed.

MRMR is used to select radiomics features that can provide less redundancy and more reliable coefficients in the classifier (29). In addition, the LASSO method is an excellent approach for feature screening, obtaining good features of both ridge regression and subset screening and enabling the panel of selected features to be combined into rad_scores (30). Therefore, optimal radiomics features were selected in this way in our study. Alternatively, it is worth mentioning that the radiomics features extracted from T2WI-FS (11/16 for MVI and 6/9 for tumor grading) and wavelet features (11/16 for MVI and 6/9 for tumor grading) exhibited higher weights in the rad_scores. These results showed that wavelet transformation can further reflect the spatial heterogeneity across multiple dimensions, which is consistent with previous studies (31,32). We also assume that radiomics features extracted from T2WI-FS are more useful for predicting the aggressive behaviors of tumors than those extracted from DWI. This could be attributed to the fact that T2WI-FS has a higher signal-to-noise ratio, spatial resolution, and image contrast than DWI images (33).

Multivariate logistic regression analysis showed that multiple tumors was an independent factor in the prediction of both MVI and tumor grading, which was consistent with previous studies (9,34,35). The presence of multiple tumors is a visible sign of invasiveness and an external manifestation of the tumor’s poor biological behavior. Tumor margin is an important predictor of MVI. Xiang et al. (34) reported that a blurry or infiltrative contour of the tumor on CT is a significant risk factor for MVI. Our results concur with this report. Tumor necrosis is another important predictive factor associated with pathological grading in the study. A common hypothesis is that the rapid growth of malignant cells, especially in the more aggressive types of cancer, with the subsequent generation of hypoxic conditions, exceeds their own blood supply and leads to necrosis of tissue areas (36). The most reliable criterion for evaluating tumor necrosis is pathological diagnosis; therefore, radiographically assessing the degree of consistency of necrosis with pathological specimens requires validation.

Our study has several limitations. First, this was a retrospective study at a single institute and may have selection bias. Therefore, external validation is anticipated in the future through a public database through a multisite study to assess the practicability of the results. Second, we did not include contrast-enhanced (CE) sequences because the patients enrolled in our study used different liver contrast agents, including liver-specific contrast agents and extracellular contrast agents. Although the nomograms in our study obtained a favorable performance in the prediction of MVI and tumor grading, CE sequences, which would show further characteristics of IMCC, might contain more information and needs further analysis. Finally, this study was also limited by the heterogeneity of the MRI protocols, which were not standardized because of the retrospective design of the study.


Conclusions

The nomograms based on MRI radiomics features and morphological features may be helpful for preoperatively predicting MVI and tumor grading in IMCC, which may help clinicians to choose individual and optimal surgical strategies to improve clinical outcomes.


Acknowledgments

Funding: None.


Footnote

Reporting Checklist: The authors have completed the TRIPOD reporting checklist. Available at https://qims.amegroups.com/article/view/10.21037/qims-23-11/rc

Conflicts of Interest: All authors have completed the ICMJE uniform disclosure form (available at https://qims.amegroups.com/article/view/10.21037/qims-23-11/coif). The authors have no conflicts of interest to declare.

Ethical Statement: The authors are accountable for all aspects of the work in ensuring that questions related to the accuracy or integrity of any part of the work are appropriately investigated and resolved. The study was conducted in accordance with the Declaration of Helsinki (as revised in 2013). The study was approved by the Ethics Committee of the National Cancer Center/Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, and the requirement for individual consent for this retrospective analysis was waived.

Open Access Statement: This is an Open Access article distributed in accordance with the Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International License (CC BY-NC-ND 4.0), which permits the non-commercial replication and distribution of the article with the strict proviso that no changes or edits are made and the original work is properly cited (including links to both the formal publication through the relevant DOI and the license). See: https://creativecommons.org/licenses/by-nc-nd/4.0/.


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Cite this article as: Chen S, Zhu Y, Wan L, Zou S, Zhang H. Predicting the microvascular invasion and tumor grading of intrahepatic mass-forming cholangiocarcinoma based on magnetic resonance imaging radiomics and morphological features. Quant Imaging Med Surg 2023;13(12):8079-8093. doi: 10.21037/qims-23-11

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